PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_05848.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 233aa    MW: 26141.1 Da    PI: 4.7066
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_05848.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1961111155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Rsa1.0_05848.1_g00002.1  61 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 111
                              68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1361111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3262120IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2162120IPR016177DNA-binding domain
SMARTSM003804.0E-3762125IPR001471AP2/ERF domain
PROSITE profilePS5103223.45962119IPR001471AP2/ERF domain
PRINTSPR003672.3E-106374IPR001471AP2/ERF domain
CDDcd000181.74E-3363121No hitNo description
PRINTSPR003672.3E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVESVSTSTS IEEYDDSLHK ERVSQLHNPY SSSDLVSQDR RVEQTDNSKK TKRVKDSGKH  60
PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GSSAILNFPE  120
LVESFPRPVS LSPRDIQTAA LKAAQMEPTT SSFASSSSDS SLESLVLVMD LTRTEAEELG  180
EIVELPSLGP SYDVNIGNEF VFSDPVDYCF YPPPWGELSE DSYGYNQVLS WDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1858124368ATERF1
3gcc_A4e-1858124368ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125819.11e-145PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-107DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM4E3I01e-145M4E3I0_BRARP; Uncharacterized protein
STRINGBra023332.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-107ERF family protein